BUSCO_phylogenetics
[1] extract_universal_single_copy_sequences.pl
Script to extract universal single-copy BUSCOs
[2] busco_seqs.tar.gz
The result of extracting the universal single-copy BUSCOs in case you fail to do it yourself
[3] align_trim_universal_single_copy_sequences.pl
Script to align (MAFFT) and trim (TrimAl) universal single-copy BUSCOs
[4] busco_alns.tar.gz
The result of aligning and trimming the universal single-copy BUSCOs in case you fail to do it yourself
[5] trees_universal_single_copy_sequences.pl
Script to run RAxML to build gene trees
[6] busco_trees_all.tar.gz
Building trees takes some time, so this tarball contains the results for all trees
[7] concatenate_universal_single_copy_sequences.pl
Script to concatenate aligned and trimmed BUSCO sequences
[8] concatenated_buscos.aln.gz
Zipped alignment file of all concatenated BUSCO sequences
[9] speciestree50.tar.gz
Results from RAxML run with 50 bootstrap samples