LOCUS MT385458 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CZB0706/2020, complete genome. ACCESSION MT385458 VERSION MT385458.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJE38738.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gaytcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT444600 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-00896/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT444600 VERSION MT444600.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ83656.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT350238 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/VA-DCLS-0048/2020, complete genome. ACCESSION MT350238 VERSION MT350238.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJA42009.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT252765 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW101/2020 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT252765 VERSION MT252765.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD48747.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT444519 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-00071/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT444519 VERSION MT444519.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ82684.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT370940 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-PV09182/2020, complete genome. ACCESSION MT370940 VERSION MT370940.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD24581.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT370967 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-PV09303/2020, complete genome. ACCESSION MT370967 VERSION MT370967.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD24905.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT325574 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/GA-CDC-2185/2020, complete genome. ACCESSION MT325574 VERSION MT325574.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIZ15705.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT326089 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-1792/2020, complete genome. ACCESSION MT326089 VERSION MT326089.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIZ13753.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT370916 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-PV08443/2020, complete genome. ACCESSION MT370916 VERSION MT370916.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD24293.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT444558 3719 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-00095/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT444558 VERSION MT444558.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene <1..3719 /gene="S" CDS <1..3719 /gene="S" /codon_start=3 /product="surface glycoprotein" /protein_id="QJQ83152.1" /translation="VYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFD NPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDP FLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNID GYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSG WTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTS NFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFS TFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVI AWNSNNLDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVCGPKKSTNLVKNKCVNFNFNGLTGTGVL TESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVL YQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIAXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIAAR DLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF NGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQ LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH DGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQ PELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQ ELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD SEPVLKGVKLHYT" gap 1231..1463 /estimated_length=233 gap 1853..2420 /estimated_length=568 gap 2795..3037 /estimated_length=243 ORIGIN 1 gtgtttatta ccctgacaaa gttttcagat cctcagtttt acattcaact caggacttgt 61 tcttaccttt cttttccaat gttacttggt tccatgctat acatgtctct gggaccaatg 121 gtactaagag gtttgataac cctgtcctac catttaatga tggtgtttat tttgcttcca 181 ctgagaagtc taacataata agaggctgga tttttggtac tactttagat tcgaagaccc 241 agtccctact tattgttaat aacgctacta atgttgttat taaagtctgt gaatttcaat 301 tttgtaatga tccatttttg ggtgtttatt accacaaaaa caacaaaagt tggatggaaa 361 gtgagttcag agtttattct agtgcgaata attgcacttt tgaatatgtc tctcagcctt 421 ttcttatgga ccttgaagga aaacagggta atttcaaaaa tcttagggaa tttgtgttta 481 agaatattga tggttatttt aaaatatatt ctaagcacac gcctattaat ttagtgcgtg 541 atctccctca gggtttttcg gctttagaac cattggtaga tttgccaata ggtattaaca 601 tcactaggtt tcaaacttta cttgctttac atagaagtta tttgactcct ggtgattctt 661 cttcaggttg gacagctggt gctgcagctt attatgtggg ttatcttcaa cctaggactt 721 ttctattaaa atataatgaa aatggaacca ttacagatgc tgtagactgt gcacttgacc 781 ctctctcaga aacaaagtgt acgttgaaat ccttcactgt agaaaaagga atctatcaaa 841 cttctaactt tagagtccaa ccaacagaat ctattgttag atttcctaat attacaaact 901 tgtgcccttt tggtgaagtt tttaacgcca ccagatttgc atctgtttat gcttggaaca 961 ggaagagaat cagcaactgt gttgctgatt attctgtcct atataattcc gcatcatttt 1021 ccacttttaa gtgttatgga gtgtctccta ctaaattaaa tgatctctgc tttactaatg 1081 tctatgcaga ttcatttgta attagaggtg atgaagtcag acaaatcgct ccagggcaaa 1141 ctggaaagat tgctgattat aattataaat taccagatga ttttacaggc tgcgttatag 1201 cttggaattc taacaatctt gattctaagg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1441 nnnnnnnnnn nnnnnnnnnn nnnactgttt gtggacctaa aaagtctact aatttggtta 1501 aaaacaaatg tgtcaatttc aacttcaatg gtttaacagg cacaggtgtt cttactgagt 1561 ctaacaaaaa gtttctgcct ttccaacaat ttggcagaga cattgctgac actactgatg 1621 ctgtccgtga tccacagaca cttgagattc ttgacattac accatgttct tttggtggtg 1681 tcagtgttat aacaccagga acaaatactt ctaaccaggt tgctgttctt tatcaggatg 1741 ttaactgcac agaagtccct gttgctattc atgcagatca acttactcct acttggcgtg 1801 tttattctac aggttctaat gtttttcaaa cacgtgcagg ctgtttaata gcnnnnnnnn 1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2401 nnnnnnnnnn nnnnnnnnnn ggtgatattg ctgctagaga cctcatttgt gcacaaaagt 2461 ttaacggcct tactgttttg ccacctttgc tcacagatga aatgattgct caatacactt 2521 ctgcactgtt agcgggtaca atcacttctg gttggacctt tggtgcaggt gctgcattac 2581 aaataccatt tgctatgcaa atggcttata ggtttaatgg tattggagtt acacagaatg 2641 ttctctatga gaaccaaaaa ttgattgcca accaatttaa tagtgctatt ggcaaaattc 2701 aagactcact ttcttccaca gcaagtgcac ttggaaaact tcaagatgtg gtcaaccaaa 2761 atgcacaagc tttaaacacg cttgttaaac aactnnnnnn nnnnnnnnnn nnnnnnnnnn 2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnntca tcttatgtcc ttccctcagt 3061 cagcacctca tggtgtagtc ttcttgcatg tgacttatgt ccctgcacaa gaaaagaact 3121 tcacaactgc tcctgccatt tgtcatgatg gaaaagcaca ctttcctcgt gaaggtgtct 3181 ttgtttcaaa tggcacacac tggtttgtaa cacaaaggaa tttttatgaa ccacaaatca 3241 ttactacaga caacacattt gtgtctggta actgtgatgt tgtaatagga attgtcaaca 3301 acacagttta tgatcctttg caacctgaat tagactcatt caaggaggag ttagataaat 3361 attttaagaa tcatacatca ccagatgttg atttaggtga catctctggc attaatgctt 3421 cagttgtaaa cattcaaaaa gaaattgacc gcctcaatga ggttgccaag aatttaaatg 3481 aatctctcat cgatctccaa gaacttggaa agtatgagca gtatataaaa tggccatggt 3541 acatttggct aggttttata gctggcttga ttgccatagt aatggtgaca attatgcttt 3601 gctgtatgac cagttgctgt agttgtctca agggctgttg ttcttgtgga tcctgctgca 3661 aatttgatga agacgactct gagccagtgc tcaaaggagt caaattacat tacacataa // LOCUS MT412255 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-5200/2020, complete genome. ACCESSION MT412255 VERSION MT412255.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJF76331.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT434814 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-CDC-SURV0168NYC/2020, complete genome. ACCESSION MT434814 VERSION MT434814.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ28285.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT093571 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/SWE/01/2020, complete genome. ACCESSION MT093571 VERSION MT093571.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QIC53204.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDCGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattg tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT012098 3819 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/IND/29/2020, complete genome. ACCESSION MT012098 VERSION MT012098.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3819 /gene="S" CDS 1..3819 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QHS34546.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYHKNNKSWMESEFRVYSSAN NCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEV FNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSF VIRGDEVIQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKS NLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELL HAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVR DPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVY STGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAY TMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLL QYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQ YTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAI GKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE VQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL MSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRN FYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIA IVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt accacaaaaa caacaaaagt tggatggaaa gtgagttcag agtttattct 481 agtgcgaata attgcacttt tgaatatgtc tctcagcctt ttcttatgga ccttgaagga 541 aaacagggta atttcaaaaa tcttagggaa tttgtgttta agaatattga tggttatttt 601 aaaatatatt ctaagcacac gcctattaat ttagtgcgtg atctccctca gggtttttcg 661 gctttagaac cattggtaga tttgccaata ggtattaaca tcactaggtt tcaaacttta 721 cttgctttac atagaagtta tttgactcct ggtgattctt cttcaggttg gacagctggt 781 gctgcagctt attatgtggg ttatcttcaa cctaggactt ttctattaaa atataatgaa 841 aatggaacca ttacagatgc tgtagactgt gcacttgacc ctctctcaga aacaaagtgt 901 acgttgaaat ccttcactgt agaaaaagga atctatcaaa cttctaactt tagagtccaa 961 ccaacagaat ctattgttag atttcctaat attacaaact tgtgcccttt tggtgaagtt 1021 tttaacgcca ccagatttgc atctgtttat gcttggaaca ggaagagaat cagcaactgt 1081 gttgctgatt attctgtcct atataattcc gcatcatttt ccacttttaa gtgttatgga 1141 gtgtctccta ctaaattaaa tgatctctgc tttactaatg tctatgcaga ttcatttgta 1201 attagaggtg atgaagtcat acaaatcgct ccagggcaaa ctggaaagat tgctgattat 1261 aattataaat taccagatga ttttacaggc tgcgttatag cttggaattc taacaatctt 1321 gattctaagg ttggtggtaa ttataattac ctgtatagat tgtttaggaa gtctaatctc 1381 aaaccttttg agagagatat ttcaactgaa atctatcagg ccggtagcac accttgtaat 1441 ggtgttgaag gttttaattg ttactttcct ttacaatcat atggtttcca acccactaat 1501 ggtgttggtt accaaccata cagagtagta gtactttctt ttgaacttct acatgcacca 1561 gcaactgttt gtggacctaa aaagtctact aatttggtta aaaacaaatg tgtcaatttc 1621 aacttcaatg gtttaacagg cacaggtgtt cttactgagt ctaacaaaaa gtttctgcct 1681 ttccaacaat ttggcagaga cattgctgac actactgatg ctgtccgtga tccacagaca 1741 cttgagattc ttgacattac accatgttct tttggtggtg tcagtgttat aacaccagga 1801 acaaatactt ctaaccaggt tgctgttctt tatcaggatg ttaactgcac agaagtccct 1861 gttgctattc atgcagatca acttactcct acttggcgtg tttattctac aggttctaat 1921 gtttttcaaa cacgtgcagg ctgtttaata ggggctgaac atgtcaacaa ctcatatgag 1981 tgtgacatac ccattggtgc aggtatatgc gctagttatc agactcagac taattctcct 2041 cggcgggcac gtagtgtagc tagtcaatcc atcattgcct acactatgtc acttggtgca 2101 gaaaattcag ttgcttactc taataactct attgccatac ccacaaattt tactattagt 2161 gttaccacag aaattctacc agtgtctatg accaagacat cagtagattg tacaatgtac 2221 atttgtggtg attcaactga atgcagcaat cttttgttgc aatatggcag tttttgtaca 2281 caattaaacc gtgctttaac tggaatagct gttgaacaag acaaaaacac ccaagaagtt 2341 tttgcacaag tcaaacaaat ttacaaaaca ccaccaatta aagattttgg tggttttaat 2401 ttttcacaaa tattaccaga tccatcaaaa ccaagcaaga ggtcatttat tgaagatcta 2461 cttttcaaca aagtgacact tgcagatgct ggcttcatca aacaatatgg tgattgcctt 2521 ggtgatattg ctgctagaga cctcatttgt gcacaaaagt ttaacggcct tactgttttg 2581 ccacctttgc tcacagatga aatgattgct caatacactt ctgcactgtt agcgggtaca 2641 atcacttctg gttggacctt tggtgcaggt gctgcattac aaataccatt tgctatgcaa 2701 atggcttata ggtttaatgg tattggagtt acacagaatg ttctctatga gaaccaaaaa 2761 ttgattgcca accaatttaa tagtgctatt ggcaaaattc aagactcact ttcttccaca 2821 gcaagtgcac ttggaaaact tcaagatgtg gtcaaccaaa atgcacaagc tttaaacacg 2881 cttgttaaac aacttagctc caattttggt gcaatttcaa gtgttttaaa tgatatcctt 2941 tcacgtcttg acaaagttga ggctgaagtg caaattgata ggttgatcac aggcagactt 3001 caaagtttgc agacatatgt gactcaacaa ttaattagag ctgcagaaat cagagcttct 3061 gctaatcttg ctgctactaa aatgtcagag tgtgtacttg gacaatcaaa aagagttgat 3121 ttttgtggaa agggctatca tcttatgtcc ttccctcagt cagcacctca tggtgtagtc 3181 ttcttgcatg tgacttatgt ccctgcacaa gaaaagaact tcacaactgc tcctgccatt 3241 tgtcatgatg gaaaagcaca ctttcctcgt gaaggtgtct ttgtttcaaa tggcacacac 3301 tggtttgtaa cacaaaggaa tttttatgaa ccacaaatca ttactacaga caacacattt 3361 gtgtctggta actgtgatgt tgtaatagga attgtcaaca acacagttta tgatcctttg 3421 caacctgaat tagactcatt caaggaggag ttagataaat attttaagaa tcatacatca 3481 ccagatgttg atttaggtga catctctggc attaatgctt cagttgtaaa cattcaaaaa 3541 gaaattgacc gcctcaatga ggttgccaag aatttaaatg aatctctcat cgatctccaa 3601 gaacttggaa agtatgagca gtatataaaa tggccatggt acatttggct aggttttata 3661 gctggcttga ttgccatagt aatggtgaca attatgcttt gctgtatgac cagttgctgt 3721 agttgtctca agggctgttg ttcttgtgga tcctgctgca aatttgatga agacgactct 3781 gagccagtgc tcaaaggagt caaattacat tacacataa // LOCUS MT412195 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MI-MDHHS-SC20070/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT412195 VERSION MT412195.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJF75611.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT358674 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-3809/2020, complete genome. ACCESSION MT358674 VERSION MT358674.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJC19863.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHXNNKSWMESEXXVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFXXXXXXXXIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYXXKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacan aaacaacaaa agttggatgg aaagtgagtn nngagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttannnnnnn nnnnnnnnnn 601 nnnnnaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tatnatnata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT334564 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-00342/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT334564 VERSION MT334564.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIZ64766.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT370963 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-PV09179/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT370963 VERSION MT370963.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD24857.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNXXIKVCEFQXXXDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMXXXXXXXXIGVTQNVLYENQKLIANQFNSX XXKIQXXLSSTASALGKLQDVXXXXXXXXXXLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSXXXXXXXXXXRAAEIRASANLXATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" gap 2344..2515 /estimated_length=172 ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgnnnn tattaaagtc tgtgaatttc aannnnnnnn tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gttnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 cnnnnnnnnn nnnnnnnnnn nnntattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtnnn nnnngcaaaa ttcaagannc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggnnnnnn nnnnnnnnnn nnnnnnnnnn 2881 anncttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt nnnnnnnnnn nnnnnnnnnn nnnnnnnnna gagctgcaga aatcagagct 3061 tctgctaatc ttnctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT251977 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW234/2020, complete genome. ACCESSION MT251977 VERSION MT251977.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QIQ68514.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT293165 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-1269/2020, complete genome. ACCESSION MT293165 VERSION MT293165.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIU81033.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT444615 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-01437/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT444615 VERSION MT444615.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ83836.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtt tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT370925 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-PV09145/2020, complete genome. ACCESSION MT370925 VERSION MT370925.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD24401.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT374115 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/CGMH-CGU-19/2020, complete genome. ACCESSION MT374115 VERSION MT374115.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD47884.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT252721 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW163/2020, complete genome. ACCESSION MT252721 VERSION MT252721.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD48411.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT334566 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-00345/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT334566 VERSION MT334566.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIZ64790.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT345883 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-4407/2020, complete genome. ACCESSION MT345883 VERSION MT345883.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJA17420.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT326156 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-1731/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT326156 VERSION MT326156.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIZ14557.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT371010 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-PV09130/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT371010 VERSION MT371010.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD25421.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT370903 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NY-PV08136/2020, complete genome. ACCESSION MT370903 VERSION MT370903.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJD24137.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT385434 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CZB0108/2020, complete genome. ACCESSION MT385434 VERSION MT385434.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJE38450.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT259264 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW272/2020, complete genome. ACCESSION MT259264 VERSION MT259264.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QIS30445.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT259258 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MN-UW266/2020, complete genome. ACCESSION MT259258 VERSION MT259258.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QIS30385.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT304475 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/KOR-BA-ACH_2718/2020, complete genome. ACCESSION MT304475 VERSION MT304475.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIV14996.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT246483 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW226/2020, partial genome. ACCESSION MT246483 VERSION MT246483.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QIQ50102.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFXXXXXXXXXXSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNSTRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaannnnnn nnnnnnnnnn 601 nnnnnnnnnn attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaact ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT345872 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/ID-UW-4357/2020, complete genome. ACCESSION MT345872 VERSION MT345872.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJA17288.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MN938384 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate 2019-nCoV_HKU-SZ-002a_2020, complete genome. ACCESSION MN938384 VERSION MN938384.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QHN73795.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT415911 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/VA-DCLS-0091/2020, complete genome. ACCESSION MT415911 VERSION MT415911.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJG65904.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ttacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT326134 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-1765/2020, complete genome. ACCESSION MT326134 VERSION MT326134.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIZ14293.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWXXXXHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggtnnnnnnn nntacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT253698 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/CHN/HZ-185/2020, complete genome. ACCESSION MT253698 VERSION MT253698.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QIQ68574.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT412219 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MI-MDHHS-SC20094/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT412219 VERSION MT412219.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJF75899.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT444603 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-01216/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT444603 VERSION MT444603.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ83692.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT444595 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-00886/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT444595 VERSION MT444595.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ83596.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYYKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attactacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT444537 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-00444/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT444537 VERSION MT444537.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ82900.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT345824 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-2140/2020, complete genome. ACCESSION MT345824 VERSION MT345824.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJA16712.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT258381 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CZB-RR057-013/2020, complete genome. ACCESSION MT258381 VERSION MT258381.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /note="structural protein" /codon_start=1 /product="surface glycoprotein" /protein_id="QIS30105.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQXVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg rtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT293197 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-UW-1593/2020, complete genome. ACCESSION MT293197 VERSION MT293197.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIU81417.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT345866 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/ID-UW-2255/2020, complete genome. ACCESSION MT345866 VERSION MT345866.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJA17216.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacctattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT439275 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/MI-MDHHS-SC20170/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), and ORF6 protein (ORF6) genes, complete cds; ORF7a protein (ORF7a) and ORF7b (ORF7b) genes, partial cds; and ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds. ACCESSION MT439275 VERSION MT439275.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QJQ39416.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg gtgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa // LOCUS MT322407 3822 bp DNA UNK 01-JAN-1980 DEFINITION Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/VA-DCLS-0017/2020, complete genome. ACCESSION MT322407 VERSION MT322407.1 KEYWORDS . SOURCE . ORGANISM . . FEATURES Location/Qualifiers gene 1..3822 /gene="S" CDS 1..3822 /gene="S" /codon_start=1 /product="surface glycoprotein" /protein_id="QIX13831.1" /translation="MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRS SVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGW IFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSA LEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNE NGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGE VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADS FVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRK SNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL LHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAV RDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRV YSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIA YTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLL LQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKP SKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSA IGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEA EVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQR NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDL GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI AIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLHYT" ORIGIN 1 atgtttgttt ttcttgtttt attgccacta gtctctagtc agtgtgttaa tcttacaacc 61 agaactcaat taccccctgc atacactaat tctttcacac gtggtgttta ttaccctgac 121 aaagttttca gatcctcagt tttacattca actcaggact tgttcttacc tttcttttcc 181 aatgttactt ggttccatgc tatacatgtc tctgggacca atggtactaa gaggtttgat 241 aaccctgtcc taccatttaa tgatggtgtt tattttgctt ccactgagaa gtctaacata 301 ataagaggct ggatttttgg tactacttta gattcgaaga cccagtccct acttattgtt 361 aataacgcta ctaatgttgt tattaaagtc tgtgaatttc aattttgtaa tgatccattt 421 ttgggtgttt attaccacaa aaacaacaaa agttggatgg aaagtgagtt cagagtttat 481 tctagtgcga ataattgcac ttttgaatat gtctctcagc cttttcttat ggaccttgaa 541 ggaaaacagg gtaatttcaa aaatcttagg gaatttgtgt ttaagaatat tgatggttat 601 tttaaaatat attctaagca cacgcctatt aatttagtgc gtgatctccc tcagggtttt 661 tcggctttag aaccattggt agatttgcca ataggtatta acatcactag gtttcaaact 721 ttacttgctt tacatagaag ttatttgact cctggtgatt cttcttcagg ttggacagct 781 ggtgctgcag cttattatgt gggttatctt caacctagga cttttctatt aaaatataat 841 gaaaatggaa ccattacaga tgctgtagac tgtgcacttg accctctctc agaaacaaag 901 tgtacgttga aatccttcac tgtagaaaaa ggaatctatc aaacttctaa ctttagagtc 961 caaccaacag aatctattgt tagatttcct aatattacaa acttgtgccc ttttggtgaa 1021 gtttttaacg ccaccagatt tgcatctgtt tatgcttgga acaggaagag aatcagcaac 1081 tgtgttgctg attattctgt cctatataat tccgcatcat tttccacttt taagtgttat 1141 ggagtgtctc ctactaaatt aaatgatctc tgctttacta atgtctatgc agattcattt 1201 gtaattagag gtgatgaagt cagacaaatc gctccagggc aaactggaaa gattgctgat 1261 tataattata aattaccaga tgattttaca ggctgcgtta tagcttggaa ttctaacaat 1321 cttgattcta aggttggtgg taattataat tacctgtata gattgtttag gaagtctaat 1381 ctcaaacctt ttgagagaga tatttcaact gaaatctatc aggccggtag cacaccttgt 1441 aatggtgttg aaggttttaa ttgttacttt cctttacaat catatggttt ccaacccact 1501 aatggtgttg gttaccaacc atacagagta gtagtacttt cttttgaact tctacatgca 1561 ccagcaactg tttgtggacc taaaaagtct actaatttgg ttaaaaacaa atgtgtcaat 1621 ttcaacttca atggtttaac aggcacaggt gttcttactg agtctaacaa aaagtttctg 1681 cctttccaac aatttggcag agacattgct gacactactg atgctgtccg tgatccacag 1741 acacttgaga ttcttgacat tacaccatgt tcttttggtg gtgtcagtgt tataacacca 1801 ggaacaaata cttctaacca ggttgctgtt ctttatcagg atgttaactg cacagaagtc 1861 cctgttgcta ttcatgcaga tcaacttact cctacttggc gtgtttattc tacaggttct 1921 aatgtttttc aaacacgtgc aggctgttta ataggggctg aacatgtcaa caactcatat 1981 gagtgtgaca tacccattgg tgcaggtata tgcgctagtt atcagactca gactaattct 2041 cctcggcggg cacgtagtgt agctagtcaa tccatcattg cctacactat gtcacttggt 2101 gcagaaaatt cagttgctta ctctaataac tctattgcca tacccacaaa ttttactatt 2161 agtgttacca cagaaattct accagtgtct atgaccaaga catcagtaga ttgtacaatg 2221 tacatttgtg gtgattcaac tgaatgcagc aatcttttgt tgcaatatgg cagtttttgt 2281 acacaattaa accgtgcttt aactggaata gctgttgaac aagacaaaaa cacccaagaa 2341 gtttttgcac aagtcaaaca aatttacaaa acaccaccaa ttaaagattt tggtggtttt 2401 aatttttcac aaatattacc agatccatca aaaccaagca agaggtcatt tattgaagat 2461 ctacttttca acaaagtgac acttgcagat gctggcttca tcaaacaata tggtgattgc 2521 cttggtgata ttgctgctag agacctcatt tgtgcacaaa agtttaacgg ccttactgtt 2581 ttgccacctt tgctcacaga tgaaatgatt gctcaataca cttctgcact gttagcgggt 2641 acaatcactt ctggttggac ctttggtgca ggtgctgcat tacaaatacc atttgctatg 2701 caaatggctt ataggtttaa tggtattgga gttacacaga atgttctcta tgagaaccaa 2761 aaattgattg ccaaccaatt taatagtgct attggcaaaa ttcaagactc actttcttcc 2821 acagcaagtg cacttggaaa acttcaagat gtggtcaacc aaaatgcaca agctttaaac 2881 acgcttgtta aacaacttag ctccaatttt ggtgcaattt caagtgtttt aaatgatatc 2941 ctttcacgtc ttgacaaagt tgaggctgaa gtgcaaattg ataggttgat cacaggcaga 3001 cttcaaagtt tgcagacata tgtgactcaa caattaatta gagctgcaga aatcagagct 3061 tctgctaatc ttgctgctac taaaatgtca gagtgtgtac ttggacaatc aaaaagagtt 3121 gatttttgtg gaaagggcta tcatcttatg tccttccctc agtcagcacc tcatggtgta 3181 gtcttcttgc atgtgactta tgtccctgca caagaaaaga acttcacaac tgctcctgcc 3241 atttgtcatg atggaaaagc acactttcct cgtgaaggtg tctttgtttc aaatggcaca 3301 cactggtttg taacacaaag gaatttttat gaaccacaaa tcattactac agacaacaca 3361 tttgtgtctg gtaactgtga tgttgtaata ggaattgtca acaacacagt ttatgatcct 3421 ttgcaacctg aattagactc attcaaggag gagttagata aatattttaa gaatcataca 3481 tcaccagatg ttgatttagg tgacatctct ggcattaatg cttcagttgt aaacattcaa 3541 aaagaaattg accgcctcaa tgaggttgcc aagaatttaa atgaatctct catcgatctc 3601 caagaacttg gaaagtatga gcagtatata aaatggccat ggtacatttg gctaggtttt 3661 atagctggct tgattgccat agtaatggtg acaattatgc tttgctgtat gaccagttgc 3721 tgtagttgtc tcaagggctg ttgttcttgt ggatcctgct gcaaatttga tgaagacgac 3781 tctgagccag tgctcaaagg agtcaaatta cattacacat aa //