Topic outline

  • SIB PhD Training Network Retreat

    19‐20 September, Hotel Au Parc, Fribourg

    • Programme

      Day 1 (19.09)

      09:30-10:00 arrival, check-in & welcome coffee
      10:00-11:00 3 presentations
      11:00-11:30 coffee break
      11:30-12:30 3 presentations
      12:30-14:00 lunch
      14:00-15:00 3 presentations
      15: 00-15:30 coffee break
      15:30-16:30 3 presentations
      ~16:45 start to social activity
      Evening dinner

      Day 2 (20.09)

      09:00-10:00 guest presentation (Daniel Wegmann)
      10:00-10:30 general discussion/questions (e.g. career) to Daniel
      10:30-11:00 coffee break (time for check-out)
      11:00-12:20 4 presentations
      12:20-13:50 lunch
      13:50-14:50 3 presentations
      14:50-15:20 coffee break
      15:20-16:00 2 presentations
      16:00-16:15 conclusions & end of the event

      • Presentations

        Daniel Wegmann
        1 Hyunjin Shim What can we learn from genetic time-sampled data?
        2 Jeremie Breda Inference of miRNA-target affinity from Single-cell data
        3 Francisco Brito Metagenomics in the Clinical Setting: Applications in virus discovery
        4 Nottania Campbell Full Length Characterization of HIV-1: Starting at the Beginning
        5 Lucia de Andres Modeling Drosophila larvae phototaxis
        6 Sara Fonseca Costa Model-Based Inference of Age Related Changes in Circadian Oscillators
        7 Marco Galimberti HMM to detect selection
        8 Lorenzo Gatti As a stone thrown in a still pond: Describing human influenza dynamics and global circulation patterns after 2009
        A/pH1N1 pandemic explosion
        9 Alexandre Gouy Detecting gene subnetworks under polygenic selection
        10 Foivos Gypas Discovery, annotation and abundance estimation of transcript isoforms from high-throughput sequencing data
        11 Kamil Jaron Comparative genomics of sexual and asexual sister species of stick insects
        12 Anna Klimovskaia Towards identifying mechanisms of fractional killing in apoptosis from single cell proteomic snapshot data
        13 Vivian Link Genotype Calling from Ancient DNA
        14 Alexis Loetscher Benchmarking orthology pipelines using orthobench
        15 Dania Machlab Measuring Allele-Specific Methylation and its Loss in Human Colorectal Adenoma
        16 Patrick Roelli Establishment of in vivo verified molecular networks that control T cell function in chronic infection
        17 Sina Rüeger Summary statistics imputation
        18 Thierry Aebischer Chimpanzees in Eastern CAR - A first survey challenges predicted occurrences and indicates a major role of rivers in limiting dispersal
        19 Isabelle Stévant Revisiting mouse sex determination with single-cell RNA-seq
        20 Janko Tackmann Towards high-resolution microbial interaction networks at a global scale
        21 Jannik Vollmer Quantitative Analysis of Growth Control at the Example of the Drosophila Eye Disc