Topic outline

  • SIB PhD Training Network Retreat

    19‐20 September, Hotel Au Parc, Fribourg

  • Programme

    Day 1 (19.09)

    09:30-10:00 arrival, check-in & welcome coffee
    10:00-11:00 3 presentations
    11:00-11:30 coffee break
    11:30-12:30 3 presentations
    12:30-14:00 lunch
    14:00-15:00 3 presentations
    15: 00-15:30 coffee break
    15:30-16:30 3 presentations
    ~16:45 start to social activity
    Evening dinner

    Day 2 (20.09)

    09:00-10:00 guest presentation (Daniel Wegmann)
    10:00-10:30 general discussion/questions (e.g. career) to Daniel
    10:30-11:00 coffee break (time for check-out)
    11:00-12:20 4 presentations
    12:20-13:50 lunch
    13:50-14:50 3 presentations
    14:50-15:20 coffee break
    15:20-16:00 2 presentations
    16:00-16:15 conclusions & end of the event

  • Presentations

    Daniel Wegmann
    1 Hyunjin Shim What can we learn from genetic time-sampled data?
    2 Jeremie Breda Inference of miRNA-target affinity from Single-cell data
    3 Francisco Brito Metagenomics in the Clinical Setting: Applications in virus discovery
    4 Nottania Campbell Full Length Characterization of HIV-1: Starting at the Beginning
    5 Lucia de Andres Modeling Drosophila larvae phototaxis
    6 Sara Fonseca Costa Model-Based Inference of Age Related Changes in Circadian Oscillators
    7 Marco Galimberti HMM to detect selection
    8 Lorenzo Gatti As a stone thrown in a still pond: Describing human influenza dynamics and global circulation patterns after 2009
    A/pH1N1 pandemic explosion
    9 Alexandre Gouy Detecting gene subnetworks under polygenic selection
    10 Foivos Gypas Discovery, annotation and abundance estimation of transcript isoforms from high-throughput sequencing data
    11 Kamil Jaron Comparative genomics of sexual and asexual sister species of stick insects
    12 Anna Klimovskaia Towards identifying mechanisms of fractional killing in apoptosis from single cell proteomic snapshot data
    13 Vivian Link Genotype Calling from Ancient DNA
    14 Alexis Loetscher Benchmarking orthology pipelines using orthobench
    15 Dania Machlab Measuring Allele-Specific Methylation and its Loss in Human Colorectal Adenoma
    16 Patrick Roelli Establishment of in vivo verified molecular networks that control T cell function in chronic infection
    17 Sina Rüeger Summary statistics imputation
    18 Thierry Aebischer Chimpanzees in Eastern CAR - A first survey challenges predicted occurrences and indicates a major role of rivers in limiting dispersal
    19 Isabelle Stévant Revisiting mouse sex determination with single-cell RNA-seq
    20 Janko Tackmann Towards high-resolution microbial interaction networks at a global scale
    21 Jannik Vollmer Quantitative Analysis of Growth Control at the Example of the Drosophila Eye Disc