Course: NGS - Single-cell RNA-Seq Analysis - November 2019 | SIB_E-learning

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NGS - Single-cell RNA-Seq Analysis

Bern, 28-29 November 2019

In room Nr. 304, 3 OG Ost, Universität Bern, Hochschulstrasse 4.

This page is addressed to registered participants. To access the course description and the application form, please click here.

For any assistance, please contact training@sib.swiss.
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Schedule
Schedule

First day
Introduction to scRNAseq:
Technologies
Experimental design
Quality control
Dropouts - Doublets
Ribosomal / mitcochondrial RNAs
Normalization and scalability
Feature selection
Log scaling
confounding factors removal
Second day
Dimentionality reduction and cell type clustering
PCA
tSNE
UMAP
Clustering methods (Hierarchical, K-means and Graph-based)
Differential expression analysis
Methods overview
DE between clusters
DE between samples (involving data-integration)
Cell type identification
Methods and applications
Pseudotime analysis
Methods and applications