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  Enrichment analysis
  

  Lausanne, 11 March 2019

  University of Lausanne, Amphipôle building, room 202

  This page is addressed to registered participants. To access course description and application form, please click here.

  For any assistance, please contact training@sib.swiss.
• Select topic R packages to install PRIOR TO the course

  R packages to install PRIOR TO the course

  library("clusterProfiler") 

  library("AnnotationDbi")

  library("rat2302.db") 

  library(“DescTools”)

  library(org.Hs.eg.db)

  library(org.Rn.eg.db)

  
  
• Select topic Schedule

  Schedule

  9:00  - 10:30    

  Recall:

  a. Differential expression

  b. Statistical tests

  Exercise

  10:30  - 10:45    coffee break

  10:45  - 12:30    

  Threshold-based versus Threshold-free enrichment

  GSEA advantages and drawbacks

  Classification of available gene enrichment methods

  Exercise

  12:30  - 13:30  lunch (on your own)

  13:30  - 15:30   

  Generalizing enrichment

  Exercice

  15:30  - 15:45  coffee break

  15:45  - 17:00  

  Ontologies and enrichment

  Exercise

  17:00    end of day