University of Lausanne, Genopode building, room 2020
This page is addressed to registered participants. To access
event description, exact location and application form, please click here.
For any assistance, please contact training@sib.swiss.
1st day: assembly of long reads
08.30 - 08.45 Welcoming
08.45 - 09.15 Philippe Reymond: Assembly of the Oak genome and assessment of somatic mutations
09.15 - 09.45 Emanuel Schmid: overview on single molecule sequencing and assembly of long reads
09.45 - 10.00 Coffee break
10.00 - 10.30 Sergey Koren: presentation of the assembler Canu and latest developments
10.30 - 11.30 demo of Sergey Koren, assembly of E. coli
11.30 - 12.30 lunch break
12.30 - 15.00 hands-on: assembling in small groups a plant contig
15.00 - 15.15 coffee break
15.15 - 17.00 hands-on: continuing genome assembly
2nd day: evaluation of genome assemblies
08.30 - 08.45 Welcoming
08.45 - 09.15 Robert Waterhouse: BUSCO- assessing genome assembly and annotation completeness
09.15 - 09.45 Damien Liebherr: SwissProt and the curation of (plant) proteins
09.45 - 010.00 Coffee break
10.00 - 10.30 Emanuel Schmid: comparison and evaluation of genome assemblies
10.30 - 12.00 hands-on: comparison of assembled genomes (& to reference)
12.00 - 13.00 lunch break
13.00 - 15.00 hands-on: comparison of assembled genomes
15.00 - 15.15 coffee break
15.15 - 17.00 hands-on: gene prediction