This page is addressed to registered participants. To access the course description and the application form, please click here.
For any assistance, please contact training@sib.swiss.
09:00 - 10:00 |
A short introduction to proteomics techniques and workflows (Dr. Manfredo Quadroni, Head Protein Analysis Facility, UNIL |
10:00 - 11:00 |
Introduction to computational proteomics and proteogenomics (Dr. Markus Mueller, Vital-IT, SIB Swiss Institute of Bioinformatics) |
11:00 - 11:30 |
Coffee break |
11:30 - 12:30 |
Variant discovery by deep sequencing (Dr. Sylvain Pradervand, Head Bioinformatics Unit, Genomic Technologies Faculty, UNIL) |
14:00 - 15:30 |
A novel, integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics (Dr. Christian Ahrens, head Bioinformatics and Proteogenomics group, Agroscope / SIB Swiss Institute of Bioinformatics) |
15:30 - 16:00 |
Coffee break |
16:00 - 17:00 |
(Christian Ahrens) |
09:00 - 10:30 |
Introduction to the MaxQuant software (Prof. Jürgen Cox, group leader Computational Systems Biochemistry, Max Planck Institute of Biochemistry) |
10:30 - 11:00 |
Coffee break |
11:00 - 12:30 |
Introduction to the Perseus software (Prof. Jürgen Cox) |
14:00 - 15:30 |
Hands-on exercises (Prof. Jürgen Cox) |
15:30 - 16:00 |
Coffee break |
16:00 - 17:00 |
Hands-on exercises (Prof. Jürgen Cox) |
09:00 - 10:00 | Putting variant information in context: the UniProtKB/Swiss-Prot reference and other resources (Dr. Lionel Breuza, Swiss-Prot group, SIB Swiss Institute of Bioinformatics) |
10:00 - 10:30 | Coffee break |
10:30 - 12:00 | MS-based immunopeptidomics - Accelerating the development of personalized cancer immunotherapy (Dr. Michal Bassani, group leader Human integrated tumor immunology discovery engine (Hi-TIDe), Department of Oncology, University Hospital of Lausanne) |
14:00 - 15:00 | Deciphering HLA-I motifs across HLA peptidomes (Prof. David Gfeller, group leader Computational Cancer Biology Group, SIB Swiss Institute of Bioinformatics / Ludwig Centre for Cancer Research of the University of Lausanne) |
15:00 - 16:00 | De novo peptide sequencing (Dr. Roman Mylonas, Protein Analysis Facility, UNIL / Vital-IT, SIB Swiss Institute of Bioinformatics) |
Knowledge / skills:
Basic knowledge of immunology (HLA, T-cell, etc) and basic computer
skills (program install, but no programming) are required. Previous
experience in proteomics is a plus.
Material / software: