Section outline

  • General

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    High Performance Computing (HPC) in Life Sciences

    Lausanne, 11 February 2015

    Several scientific applications require computing and/or storage resources that go beyond the processing power of a single multi-core machine. High performance computing (HPC) clusters provide the necessary hardware and software infrastructure to efficiently run computing and data intensive applications. The course provides detailed information on how to efficiently use Vital-IT's compute and storage infrastructure for life science applications.

    Objectives:
    • Obtain basic knowledge on high throughput and high performance computing
    • Learn how to use Vital-IT's infrastructure for scientific applications (including hands-on exercises)
    • Tips and tricks for effective and efficient cluster usage (incl. compute and storage usage guidelines)
    • Discuss particular computing needs and requirements of course participants

    Requirements:
    • Basic understanding of working with command line tools on Linux or Windows-based operating systems (Link to our UNIX Fundamentals self-learning module and to our First Steps with UNIX course).
    • Scripting language such as bash or Perl is an asset
    • Please bring your own PC with WIFI Eduroam activated (Windows with Putty application installed or a Linux or Mac with a Terminal application)
    • Complete the exercise 'UNIX evalutation' before the course - see below

    Application:
    Application is closed

  • Topic 1

    Wednesday, 11 February 2015

    Vassilios Ioannidis (SIB Technology, Vital-IT), Grégoire Rossier (Training and Outreach, Vital-IT), Heinz Stockinger (CTO),

    09h00 -10h30
    Introduction to HPC and Basic Infrastructure Usage

    11h00 - 12h30
    Exercises I

    13h30 - 14h45
    Advanced Infrastructure Usage and Use Case Discussion

    15h00 - 16h30
    Exercises II

    16h30 - 17h00
    Optional exam