Topic outline

  • General

    Sequence databases and UniProt: use and pitfalls

    Geneva, 21 & 26 June 2012

    The goal of these 2 half-days courses is to give some basic theoretical and practical knowledge on sequence databases and, in particular, on the optimum use of the UniProt web site.

    - Where do the DNA and protein sequences come from?
    - What are the differences between UniProtKB/TrEMBL and UniProtKB/Swiss-Prot?
    - What are the manual and automated annotation pipelines ?
    - How to estimate protein sequence accuracy and annotation quality?
    - How to retrieve large dataset (i.e. complete proteome) for a particular organism?
    - How to extract biological knowledge from a Blast result?
    - What are the differences between UniProt and the NCBI protein sequence databases?
    - What's about Gene Ontology?

    Speaker:

    Marie-Claude Blatter (SIB)

    Requirements:

    A laptop with wireless connectivity is mandatory.

    Practical organization - Location

    Sessions runs from 13:00 to 16:00 approximately.
    These 2 half-day courses are held in room 3079 in Science III (Quai Ernest Ansermet, 1211 Geneva)

    Registration:

    Registration is closed.