Technical / software prerequisite
Section outline
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Participants must bring a laptop and install the following:
- 64-bit Java 8
- the latest version of the R, R Studio with Markdown and Cytoscape software installed.
- the R package Markdown: install.packages("markdown")
- the R package RCy3: (see https://cytoscape.org/cytoscape-tutorials/presentations/modules/prep-advanced-automation/index.html)
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RCy3")- the R package WGCNA and some Bioconductor packages that are used by WGCNA using these commands:
source("https://bioconductor.org/biocLite.R")
biocLite("WGCNA")