Section outline

  • Organizers: Pilar Junier, Grégoire Rossier 

    Wednesday 12.09

    Afternoon

    • Introduction to metagenomics data analysis: why provenance matters (Alex Mitchell, EBI)
    • Markers, reference databases and genes for taxonomic analysis (Rob Finn, EBI)

     

    Thurdsay 13.09

    Morning

    • Targeted analysis considerations and hands-on example with Mothur on Galaxy (Laurent Falquet, University of Fribourg / SIB)


    Afternoon

    • EBI metagenomics with hands on (EBI)
    • Assembly & Binning (EBI)

     

    Friday 14.09

    Morning

    • Bacteria within fungal genome with hands-on using EDGE platform (Geoffrey House)

     Afternoon

    • Co-assembly and species/strain resolution
    • Tools for comparative metagenomics or Estimating sequence diversity and coverage


    End of the event: around 4 PM