Monday 3 February 2014

Morning session

Population genetics (Matthieu Foll (slides), Greg Ewing (slides))

Exercises

Software needed for exercises (already installed in virtual machine):

msms: http://www.mabs.at/ewing/msms/download.shtml

Afternoon session

Genetic diversity (Niko Beerenwinkel (slides))

Exercises

Data

Software needed for exercises (already installed in virtual machine):

bwa 0.7.5a: http://bio-bwa.sourceforge.net/

samtools: http://sourceforge.net/projects/samtools/files/

InDelFixer 1.1: https://github.com/armintoepfer/InDelFixer/releases

Tablet: http://bioinf.scri.ac.uk/tablet/download.shtml

QuasiRecomb: https://github.com/armintoepfer/QuasiRecomb/releases

QuasiFit: https://github.com/SoapZA/QuasiFit/releases

Exam